DNA Binding Motif

Accessions: ARR10 (Athamap 20091028)
Names: ARR10
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
Length: 12
Consensus: GskwAGAThykc
Weblogo:
PSSM: P0 A C G T
01 3 1 10 0 G
02 3 5 5 1 s
03 1 1 6 6 k
04 6 1 2 5 w
05 14 0 0 0 A
06 0 0 14 0 G
07 14 0 0 0 A
08 0 0 0 14 T
09 4 6 0 4 h
10 0 8 0 6 y
11 0 0 8 6 k
12 2 7 3 2 c
Binding TFs: ARR10 (Response regulator receiver domain, Myb-like DNA-binding domain)
Publications: Hosoda K., Imamura A., Katoh E., Hatta T., Tachiki M., Yamada H., Mizuno T., Yamazaki T. Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.. Plant Cell 14:2015-2029 (2002). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.