DNA Binding Motif

Accessions: PF0109.1 (JASPAR 2024)
Names: YGTCCTTGR
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: phylogenetic
Length: 9
Consensus: TGTCCTTGr
Weblogo:
PSSM: P0 A C G T
01 0 63 0 265 T
02 0 0 328 0 G
03 0 0 0 328 T
04 0 328 0 0 C
05 0 328 0 0 C
06 0 0 0 328 T
07 0 0 0 328 T
08 0 0 328 0 G
09 137 0 191 0 r
Binding Sites: PF0109.1.1 / PF0109.1.19 / PF0109.1.2
PF0109.1.10 / PF0109.1.11 / PF0109.1.16 / PF0109.1.18 / PF0109.1.20 / PF0109.1.3 / PF0109.1.5 / PF0109.1.7 / PF0109.1.9
PF0109.1.12 / PF0109.1.13 / PF0109.1.17 / PF0109.1.6
PF0109.1.14 / PF0109.1.15 / PF0109.1.4 / PF0109.1.8
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

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