DNA Binding Motif

						

			
Accessions: MA1147.1 (JASPAR 2024)

			
Names: NR4A2::RXRA
Organisms: Homo sapiens, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SMiLE-seq
Length: 15
Consensus: rrGGTCrtTGACCyc
Weblogo: 
PSSM: P0      A      C      G      T
01    288    212    371    130      r
02    498    124    348     29      r
03     20     11    924     46      G
04     51      7    804    139      G
05     46    134    128    691      T
06      7    824     31    138      C
07    592     38    343     27      r
08    248     60     87    604      t
09      2     69      5    924      T
10     70     82    836     12      G
11    926     54     17      3      A
12    157    830      2     11      C
13     40    937      4     20      C
14      5    535     23    437      y
15    104    473    180    244      c
Type: Heterodimer
Binding TFs: P19793 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
P43354 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P19793
P43354
			
Publications: Perlmann T., Jansson L. A novel pathway for vitamin A signaling mediated by RXR heterodimerization with NGFI-B and NURR1. Genes Dev. 9:769-782 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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