DNA Binding Motif

Accessions: SigD_1 (DBTBS 1.0)
Names: SigD_1
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 4
Consensus: TwAA
Weblogo:
PSSM: P0 A C G T
01 0.11 0 0.05 0.84 T
02 0.63 0.12 0 0.25 w
03 0.80 0.18 0 0.02 A
04 0.72 0 0.05 0.23 A
Binding TFs: SigD (Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4)
Binding Sites: cheV
degR_1
dltA_1
epr_2
flgB_2
hag_2
hemAT
lytA_2
lytD
lytF
mcpA
mcpB
mcpC
motA
nfrA_2
sigA
tlpA
tlpB
tlpC
ybdO
yfmT
yjbJ
yjcP
yjfB
ylqB
yoaH
yscB
yvyC
yvyF
yxkC_1
Publications: Fredrick K.L, Helmann J.D. Dual chemotaxis signaling pathways in Bacillus subtilis: a sigma D-dependent gene encodes a novel protein with both CheW and CheY homologous domains. Journal of bacteriology 176:2727-35 (1994). [Pubmed]

Ogura M, Tanaka T. Transcription of Bacillus subtilis degR is sigma D dependent and suppressed by multicopy proB through sigma D. Journal of bacteriology 178:216-22 (1996). [Pubmed]

Perego M, Glaser P, Minutello A, Strauch M.A, Leopold K, Fischer W. Incorporation of D-alanine into lipoteichoic acid and wall teichoic acid in Bacillus subtilis. Identification of genes and regulation. The Journal of biological chemistry 270:15598-606 (1995). [Pubmed]

Dixit M, Murudkar C.S, Rao K.K. Epr is transcribed from a final sigma(D) promoter and is involved in swarming of Bacillus subtilis. Journal of bacteriology 184:596-9 (2002). [Pubmed]

Estacio W, Anna-Arriola S.S, Adedipe M, Márquez-Magaña L.M. Dual promoters are responsible for transcription initiation of the fla/che operon in Bacillus subtilis. Journal of bacteriology 180:3548-55 (1998). [Pubmed]

Gilman M.Z, Glenn J.S, Singer V.L, Chamberlin M.J. Isolation of sigma-28-specific promoters from Bacillus subtilis DNA. Gene 32:11-20 (1984). [Pubmed]

Mirel D.B, Chamberlin M.J. The Bacillus subtilis flagellin gene (hag) is transcribed by the sigma 28 form of RNA polymerase. Journal of bacteriology 171:3095-101 (1989). [Pubmed]

Serizawa M, Yamamoto H, Yamaguchi H, Fujita Y, Kobayashi K, Ogasawara N, Sekiguchi J. Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene 329:125-36 (2004). [Pubmed]

Lazarevic V, Margot P, Soldo B, Karamata D. Sequencing and analysis of the Bacillus subtilis lytRABC divergon: a regulatory unit encompassing the structural genes of the N-acetylmuramoyl-L-alanine amidase and its modifier. Journal of general microbiology 138:1949-61 (1992). [Pubmed]

Kuroda A, Sekiguchi J. High-level transcription of the major Bacillus subtilis autolysin operon depends on expression of the sigma D gene and is affected by a sin (flaD) mutation. Journal of bacteriology 175:795-801 (1993). [Pubmed]

Rashid M.H, Mori M, Sekiguchi J. Glucosaminidase of Bacillus subtilis: cloning, regulation, primary structure and biochemical characterization. Microbiology (Reading, England) 141 ( Pt 10):2391-404 (1995). [Pubmed]

Margot P, Mauël C, Karamata D. The gene of the N-acetylglucosaminidase, a Bacillus subtilis 168 cell wall hydrolase not involved in vegetative cell autolysis. Molecular microbiology 12:535-45 (1994). [Pubmed]

Margot P, Pagni M, Karamata D. Bacillus subtilis 168 gene lytF encodes a gamma-D-glutamate-meso-diaminopimelate muropeptidase expressed by the alternative vegetative sigma factor, sigmaD. Microbiology (Reading, England) 145 ( Pt 1):57-65 (1999). [Pubmed]

Ohnishi R, Ishikawa S, Sekiguchi J. Peptidoglycan hydrolase LytF plays a role in cell separation with CwlF during vegetative growth of Bacillus subtilis. Journal of bacteriology 181:3178-84 (1999). [Pubmed]

Hanlon D.W, Ordal G.W. Cloning and characterization of genes encoding methyl-accepting chemotaxis proteins in Bacillus subtilis. The Journal of biological chemistry 269:14038-46 (1994). [Pubmed]

Müller J, Schiel S, Ordal G.W, Saxild H.H. Functional and genetic characterization of mcpC, which encodes a third methyl-accepting chemotaxis protein in Bacillus subtilis. Microbiology (Reading, England) 143 ( Pt 10):3231-40 (1997). [Pubmed]

Gilman M.Z, Wiggs J.L, Chamberlin M.J. Nucleotide sequences of two Bacillus subtilis promoters used by Bacillus subtilis sigma-28 RNA polymerase. Nucleic acids research 9:5991-6000 (1981). [Pubmed]

Gilman M.Z, Chamberlin M.J. Developmental and genetic regulation of Bacillus subtilis genes transcribed by sigma 28-RNA polymerase. Cell 35:285-93 (1983). [Pubmed]

Moch C, Schrögel O, Allmansberger R. The sigmaD-dependent transcription of the ywcG gene from Bacillus subtilis is dependent on an excess of glucose and glutamate. Molecular microbiology 27:889-98 (1998). [Pubmed]

Wang L.F, Price C.W, Doi R.H. Bacillus subtilis dnaE encodes a protein homologous to DNA primase of Escherichia coli. The Journal of biological chemistry 260:3368-72 (1985). [Pubmed]

Briat J.F, Gilman M.Z, Chamberlin M.J. Bacillus subtilis sigma 28 and Escherichia coli sigma 32 (htpR) are minor sigma factors that display an overlapping promoter specificity. The Journal of biological chemistry 260:2038-41 (1985). [Pubmed]

Hanlon D.W, Rosario M.M, Ordal G.W, Venema G, Van Sinderen D. Identification of TlpC, a novel 62 kDa MCP-like protein from Bacillus subtilis. Microbiology (Reading, England) 140 ( Pt 8):1847-54 (1994). [Pubmed]

Chen L, Helmann J.D. The Bacillus subtilis sigma D-dependent operon encoding the flagellar proteins FliD, FliS, and FliT. Journal of bacteriology 176:3093-101 (1994). [Pubmed]

Mirel D.B, Lauer P, Chamberlin M.J. Identification of flagellar synthesis regulatory and structural genes in a sigma D-dependent operon of Bacillus subtilis. Journal of bacteriology 176:4492-500 (1994). [Pubmed]

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