DNA Binding Motif

Accessions: MA0086.2 (JASPAR 2018)
Names: sna
Organisms: Drosophila melanogaster
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: SMiLE-seq
Length: 13
Consensus: kbrACAGGTGyaa
Weblogo:
PSSM: P0 A C G T
01 241 200 309 250 k
02 128 324 264 284 b
03 454 57 387 102 r
04 835 7 114 44 A
05 5 984 6 5 C
06 984 4 7 5 A
07 87 4 903 6 G
08 5 4 986 5 G
09 5 4 7 984 T
10 10 5 976 10 G
11 42 455 184 319 y
12 535 139 147 179 a
13 290 244 230 236 a
Binding TFs: P08044 (C2H2-type zinc finger, C2H2-type zinc finger, Zinc finger, C2H2 type, Zinc-finger double domain)
Publications: Mauhin V., Lutz Y., Dennefeld C., Alberga A. Definition of the DNA-binding site repertoire for the Drosophila transcription factor SNAIL. Nucleic Acids Res. 21:3951-3957 (1993). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.