DNA Binding Motif

Accessions: GlpR (RegulonDB 7.5)
Names: GlpR, GlpR DNA-binding transcriptional repressor
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 20
Consensus: awATGwkcrawwwCGmrCaw
Weblogo:
PSSM: P0 A C G T
01 11 2 1 3 a
02 9 2 0 6 w
03 12 2 1 2 A
04 0 2 0 15 T
05 1 0 14 2 G
06 7 4 1 5 w
07 0 2 7 8 k
08 3 11 3 0 c
09 8 2 6 1 r
10 11 0 2 4 a
11 7 0 1 9 w
12 9 1 1 6 w
13 8 2 0 7 w
14 0 15 1 1 C
15 3 0 14 0 G
16 10 7 0 0 m
17 9 1 7 0 r
18 3 14 0 0 C
19 8 1 4 4 a
20 5 3 1 8 w
Binding TFs: ECK120004869 (Bacterial regulatory proteins, gntR family, DeoR C terminal sensor domain, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: ECK120012732
ECK120012734
ECK120012740
ECK120012743
ECK120012746
ECK120012749
ECK120013454
ECK120013456
ECK120013458
ECK120013460
ECK120013462
ECK120013464
ECK120013968
ECK120013970
ECK120015213
ECK120015215
ECK120015217
ECK120015606

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.