DNA Binding Motif

						

			
Accessions: MA1159.1 (JASPAR 2024), M0318 (AthalianaCistrome v4_May2016)

			
Names: SGR5, SGR5.DAP, T10980;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: araAwAAGACAAAAw
Weblogo: 
PSSM: P0      A      C      G      T
01    293    126     40    141      a
02    343     57    160     40      r
03    340     48    116     96      a
04    433      0     44    123      A
05    310     16     27    247      w
06    486     22     92      0      A
07    532      4     22     42      A
08     33      0    566      1      G
09    591      6      0      3      A
10      0    599      1      0      C
11    592      1      7      0      A
12    598      1      0      1      A
13    560     10     11     19      A
14    428     34     21    117      A
15    285     83     43    189      w
Type: Heterodimer
Binding TFs: F4IPE3
T10980
F4IPE3
Binding Sites: MA1159.1.1
MA1159.1.10
MA1159.1.11
MA1159.1.12
MA1159.1.13
MA1159.1.14
MA1159.1.15
MA1159.1.16
MA1159.1.17
MA1159.1.18
MA1159.1.19
MA1159.1.2
MA1159.1.20
MA1159.1.3
MA1159.1.4
MA1159.1.5
MA1159.1.6
MA1159.1.7
MA1159.1.8
MA1159.1.9
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.