DNA Binding Motif

Accessions: 1zg1_E (3D-footprint 2022-04-03)
Names: Nitrate/nitrite response regulator protein narL
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site
Length: 4
Consensus: TACT
01 1 8 0 87 T
02 69 8 8 11 A
03 8 72 8 8 C
04 8 11 8 69 T
Binding TFs: 1zg1_E (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4, Winged helix-turn-helix DNA-binding)
Binding Sites: 1zg1_H
Publications: Maris AE., Kaczor-Grzeskowiak M., Ma Z., Kopka ML., Gunsalus RP., Dickerson RE. Primary and secondary modes of DNA recognition by the NarL two-component response regulator. Biochemistry. 44(44):14538-52 (2005). [Pubmed]


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