DNA Binding Motif

						

			
Accessions: Alx1_DBD_1 (HumanTF 1.0)

			
Names: Alx1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 3
Length: 10
Consensus: yyyAATTArm
Weblogo: 
PSSM: P0      A      C      G      T
01   6727  12906   5960  22850      y
02   4591  22778   6097  14978      y
03   4146  14443   1642  34001      y
04  48444    726   3524   1113      A
05  48444    157    287    254      A
06    165    282     41  48444      T
07   1862   2623    340  48444      T
08  48444   1774     76   3148      A
09  17454   9218  15257   6515      r
10  18331  14142   9226   6745      m
Binding TFs: Alx1_DBD (Homeobox domain, Homeobox KN domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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