DNA Binding Motif

						

			
Accessions: CN0041.1 (JASPAR 2024)

			
Names: LM41
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 16
Consensus: cTTTGAAATGCwAATk
Weblogo: 
PSSM: P0      A      C      G      T
01     69    254     37    108      c
02     13      8      2    445      T
03      8     16      7    437      T
04     23      1      9    435      T
05     10     38    406     14      G
06    442      8     13      5      A
07    401     15      5     47      A
08    442      4      4     18      A
09      0      0      3    465      T
10      5      0    430     33      G
11      9    373     19     67      C
12    168      9      1    290      w
13    446      1     15      6      A
14    461      0      2      5      A
15     13      6     11    438      T
16     59     47    197    165      k
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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