DNA Binding Motif

Accessions: MA1345.1 (JASPAR 2018), M0223 (AthalianaCistrome v4_May2016)
Names: bZIP48, bZIP48.DAP, T09187;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: KCCACGTCAGCawh
Weblogo:
PSSM: P0 A C G T
01 7 4 328 114 K
02 84 369 0 0 C
03 0 452 0 1 C
04 453 0 0 0 A
05 1 449 0 3 C
06 4 1 448 0 G
07 0 1 0 452 T
08 36 417 0 0 C
09 433 0 16 4 A
10 5 24 319 105 G
11 53 384 3 13 C
12 279 34 33 107 a
13 130 77 72 174 w
14 122 145 46 140 h
Binding TFs: T09187 / Q8RU59 (Basic region leucine zipper, bZIP transcription factor)
Binding Sites: MA1345.1.1
MA1345.1.10
MA1345.1.11
MA1345.1.12
MA1345.1.13 / MA1345.1.18
MA1345.1.14
MA1345.1.15
MA1345.1.16
MA1345.1.17
MA1345.1.19
MA1345.1.2
MA1345.1.20
MA1345.1.3
MA1345.1.4
MA1345.1.5
MA1345.1.6
MA1345.1.7
MA1345.1.8
MA1345.1.9
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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