DNA Binding Motif

						

			
Accessions: MA0139.1 (JASPAR 2024)

			
Names: CTCF
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 19
Consensus: ygrCCAsyAGrkGGCrsyr
Weblogo: 
PSSM: P0      A      C      G      T
01     87    291     76    459      y
02    167    145    414    187      g
03    281     49    449    134      r
04     56    800     21     36      C
05      8    903      0      2      C
06    744     13     65     91      A
07     40    528    334     11      s
08    107    433     48    324      y
09    851     11     32     18      A
10      5      0    903      3      G
11    333      3    566      9      r
12     54     12    504    341      k
13     12      0    890      8      G
14     56      8    775     71      G
15    104    733      5     67      C
16    372     13    507     17      r
17     82    482    307     37      s
18    117    322     73    396      y
19    402    181    266     59      r
Type: Heterodimer
Binding TFs: P49711 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P49711
Binding Sites: MA0139.1.1 / MA0139.1.2
MA0139.1.10
MA0139.1.11
MA0139.1.12
MA0139.1.13
MA0139.1.14
MA0139.1.15
MA0139.1.16
MA0139.1.17
MA0139.1.18
MA0139.1.19
MA0139.1.20
MA0139.1.3
MA0139.1.4
MA0139.1.5
MA0139.1.6
MA0139.1.7
MA0139.1.8
MA0139.1.9
			
Publications: Barski A, Cuddapah S, Cui K, Roh T.Y, Schones D.E, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 129:823-37 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.