DNA Binding Motif

Accessions: MA1012.1 (JASPAR 2018)
Names: AGL27
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-seq
Length: 14
Consensus: cTTTCyATTTTkGk
Weblogo:
PSSM: P0 A C G T
01 25 78 25 14 c
02 1 4 0 137 T
03 0 0 0 142 T
04 14 0 1 127 T
05 0 142 0 0 C
06 0 55 0 87 y
07 108 0 1 33 A
08 32 2 0 108 T
09 9 0 0 133 T
10 2 0 0 140 T
11 15 21 2 104 T
12 17 15 42 68 k
13 33 0 109 0 G
14 11 2 92 37 k
Binding TFs: Q9AT76 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA1012.1.1
MA1012.1.10
MA1012.1.11
MA1012.1.12
MA1012.1.13
MA1012.1.14
MA1012.1.15
MA1012.1.16
MA1012.1.17
MA1012.1.18
MA1012.1.19
MA1012.1.2
MA1012.1.20
MA1012.1.3
MA1012.1.4
MA1012.1.5
MA1012.1.6
MA1012.1.7
MA1012.1.8
MA1012.1.9
Publications: Posé D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M. Temperature-dependent regulation of flowering by antagonistic FLM variants. Nature 503:414-7 (2013). [Pubmed]

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