DNA Binding Motif

Accessions: MA1008.1 (JASPAR 2024)
Names: PHYPADRAFT_182268
Organisms: Physcomitrella patens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: wkGTCGGTGr
Weblogo:
PSSM: P0 A C G T
01 292 180 180 348 w
02 144 79 288 489 k
03 0 0 1000 0 G
04 0 0 0 1000 T
05 0 1000 0 0 C
06 0 0 1000 0 G
07 0 0 1000 0 G
08 0 76 0 924 T
09 70 70 789 70 G
10 292 246 291 171 r
Type: Heterodimer
Binding TFs: A9S898 (AP2 domain)
A9S898
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.