DNA Binding Motif

Accessions: MA0359.1 (JASPAR 2024)
Names: RAP1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM, CSA and/or DIP-chip
Length: 10
Consensus: CACCCRtACA
Weblogo:
PSSM: P0 A C G T
01 18 69 12 1 C
02 98 0 0 1 A
03 1 75 0 23 C
04 1 97 1 1 C
05 1 90 0 9 C
06 71 0 27 2 R
07 17 11 8 65 t
08 72 0 14 14 A
09 1 98 0 1 C
10 86 13 0 1 A
Type: Heterodimer
Binding TFs: P11938 (Myb-like DNA-binding domain, Rap1, DNA-binding, Rap1 - C terminal domain)
P11938
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

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