DNA Binding Motif

						

			
Accessions: MA0137.2 (JASPAR 2024)

			
Names: STAT1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: cayTTCChrGAAryc
Weblogo: 
PSSM: P0      A      C      G      T
01    208   1076    415    378      c
02    859    496    279    446      a
03    251    574    144   1112      y
04     10     22     11   2038      T
05      8     14     38   2023      T
06    106   1921     14     44      C
07     23   1900      7    155      C
08    528    762    115    680      h
09    696     31   1292     66      r
10     53     30   1700    302      G
11   1900    124     29     32      A
12   2030     17     23     15      A
13    954    263    552    315      r
14    336    760    270    714      y
15    417    804    425    431      c
Type: Heterodimer
Binding TFs: Q53XW4 (SH2 domain, STAT protein, all-alpha domain, STAT protein, DNA binding domain, STAT protein, protein interaction domain, STAT1 TAZ2 binding domain)
Q53XW4
Binding Sites: MA0137.2.1
MA0137.2.10
MA0137.2.11
MA0137.2.12
MA0137.2.13
MA0137.2.14
MA0137.2.15
MA0137.2.16
MA0137.2.17
MA0137.2.18
MA0137.2.19
MA0137.2.2
MA0137.2.20
MA0137.2.3
MA0137.2.4
MA0137.2.5
MA0137.2.6
MA0137.2.7
MA0137.2.8
MA0137.2.9
			
Publications: Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith O.L, He A, Marra M, Snyder M, Jones S. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nature methods 4:651-7 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.