DNA Binding Motif

Accessions: MA0112.2 (JASPAR 2024)
Names: ESR1
Organisms: Homo sapiens, Oryctolagus cuniculus, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 20
Consensus: vkscmaGGtCAcccTGaCCy
Weblogo:
PSSM: P0 A C G T
01 122 120 154 71 v
02 107 80 164 117 k
03 64 173 149 82 s
04 83 229 65 93 c
05 134 232 47 57 m
06 308 28 89 48 a
07 36 8 387 43 G
08 19 18 420 18 G
09 33 41 91 310 t
10 4 394 53 24 C
11 398 13 27 37 A
12 58 250 107 60 c
13 63 276 53 83 c
14 64 258 97 56 c
15 32 19 8 416 T
16 21 22 426 6 G
17 305 106 31 33 a
18 10 436 12 17 C
19 59 353 2 61 C
20 26 165 22 262 y
Type: Heterodimer
Binding TFs: P03372 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Oestrogen receptor, Oestrogen-type nuclear receptor final C-terminal )
P03372
Binding Sites: MA0112.2.1
MA0112.2.10
MA0112.2.11
MA0112.2.12
MA0112.2.13
MA0112.2.14
MA0112.2.15
MA0112.2.16
MA0112.2.17
MA0112.2.18
MA0112.2.19
MA0112.2.2
MA0112.2.20
MA0112.2.3
MA0112.2.4
MA0112.2.5
MA0112.2.6
MA0112.2.7
MA0112.2.8
MA0112.2.9
Publications: Welboren W.J, van Driel M.A, Janssen-Megens E.M, van Heeringen S.J, Sweep F.C, Span P.N, Stunnenberg H.G. ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. The EMBO journal 28:1418-28 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.