DNA Binding Motif

Accessions: M0425_1.02 (CISBP 1.02)
Names: Hic1, T049232_1.02
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 9
Consensus: rgtkGGCAy
01 0.2620 0.2103 0.3467 0.1810 r
02 0.2214 0.1370 0.5284 0.1133 g
03 0.1576 0.1906 0.2192 0.4327 t
04 0.0566 0.0095 0.3861 0.5479 k
05 0.0047 0.0017 0.9795 0.0141 G
06 0.0016 0.0135 0.9842 0.0007 G
07 0.0059 0.8540 0.0032 0.1370 C
08 0.9713 0.0018 0.0255 0.0014 A
09 0.0948 0.4334 0.0875 0.3844 y
Binding TFs: T049232_1.02 (BTB/POZ domain, C2H2-type zinc finger, C2H2-type zinc finger, Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain)
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]


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