DNA Binding Motif

Accessions: 3dfx_AB (3D-footprint 20231221)
Names: Trans-acting T-cell-specific transcription factor GATA-3
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Opposite GATA DNA binding
Length: 13
Consensus: TTATCTCTGATTT
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 0 96 T
03 96 0 0 0 A
04 0 0 0 96 T
05 0 96 0 0 C
06 9 9 9 69 T
07 9 67 11 9 C
08 0 0 0 96 T
09 0 0 96 0 G
10 96 0 0 0 A
11 0 0 0 96 T
12 0 0 0 96 T
13 9 9 11 67 T
Binding TFs: 3dfx_A / 3dfx_B (GATA zinc finger)
Binding Sites: 3dfx_X
3dfx_Y
Publications: Bates D.L, Chen Y, Kim G, Guo L, Chen L. Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA. Journal of molecular biology 381:1292-306 (2008). [Pubmed]

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