DNA Binding Motif
| Accessions: | PucR (DBTBS 1.0) |
| Names: | PucR |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 12 |
| Consensus: | TTGgTtAmgGTG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0 0 0.85 T 02 0 0 0 1 T 03 0 0 1 0 G 04 0 0.19 0.58 0.22 g 05 0.15 0 0 0.85 T 06 0 0.23 0.23 0.54 t 07 1 0 0 0 A 08 0.61 0.26 0 0.13 m 09 0.11 0 0.65 0.25 g 10 0 0.19 0.72 0.09 G 11 0 0 0 1 T 12 0.10 0 0.90 0 G |
| Binding TFs: | PucR (CodY GAF-like domain, PucR C-terminal helix-turn-helix domain) |
| Binding Sites: | guaD_1 pucH_1 pucJ_1 ureA_3 yurH_1 ywoE_1 |
| Publications: | Beier L, Nygaard P, Jarmer H, Saxild H.H. Transcription analysis of the Bacillus subtilis PucR regulon and identification of a cis-acting sequence required for PucR-regulated expression of genes involved in purine catabolism. Journal of bacteriology 184:3232-41 (2002). [Pubmed] Brandenburg J.L, Wray L.V, Beier L, Jarmer H, Saxild H.H, Fisher S.H. Roles of PucR, GlnR, and TnrA in regulating expression of the Bacillus subtilis ure P3 promoter. Journal of bacteriology 184:6060-4 (2002). [Pubmed] |
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