DNA Binding Motif

						

			
Accessions: MA1050.1 (JASPAR 2024)

			
Names: OsI_08196
Organisms: Oryza sativa Indica Group
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: GGGCCCAC
Weblogo: 
PSSM: P0      A      C      G      T
01      1      1    946     53      G
02     46      0    953      0      G
03     91     91    726     91      G
04      0    863     46     91      C
05      0    999      0      0      C
06      0    999      0      0      C
07    899     50     50      0      A
08      1    855     72     72      C
Type: Heterodimer
Binding TFs: A2X7K8 (TCP family transcription factor)
A2X7K8
			
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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