DNA Binding Motif

Accessions: 1j5n_A (3D-footprint 20231221)
Names: Nonhistone chromosomal protein 6A
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA
Length: 7
Consensus: AACAATc
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 76 0 19 1 A
03 0 96 0 0 C
04 96 0 0 0 A
05 96 0 0 0 A
06 0 0 0 96 T
07 20 38 19 19 c
Binding TFs: 1j5n_A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 1j5n_B
1j5n_C
Publications: Masse J.E, Wong B, Yen Y.M, Allain F.H, Johnson R.C, Feigon J. The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. Journal of molecular biology 323:263-84 (2002). [Pubmed]

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