DNA Binding Motif

						

			
Accessions: 2kae_A (3D-footprint 20231221)

			
Names: GATA-type transcription factor
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: data-driven model of MED1:DNA complex
Length: 10
Consensus: AGTATACTTT
Weblogo: 
PSSM: P0      A      C      G      T
01     88      2      2      4      A
02      2      2     90      2      G
03      2      4      2     88      T
04     96      0      0      0      A
05      0      0      0     96      T
06     96      0      0      0      A
07     10     66     10     10      C
08      3      5      3     85      T
09      0      0      0     96      T
10      0      0      0     96      T
Binding TFs: 2kae_A (GATA zinc finger)
Binding Sites: 2kae_B / 2kae_C
			
Publications: Lowry J.A, Gamsjaeger R, Thong S.Y, Hung W, Kwan A.H, Broitman-Maduro G, Matthews J.M, Maduro M, Mackay J.P. Structural analysis of MED-1 reveals unexpected diversity in the mechanism of DNA recognition by GATA-type zinc finger domains. The Journal of biological chemistry 284:5827-35 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.