DNA Binding Motif

Accessions: 6jnn_B (3D-footprint 20231221)
Names: Lysine-specific demethylase REF6
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: REF6 ZnF2-4-NAC004-mC1 complex
Length: 6
Consensus: aACAGA
Weblogo:
PSSM: P0 A C G T
01 39 19 19 19 a
02 96 0 0 0 A
03 0 96 0 0 C
04 96 0 0 0 A
05 3 3 85 5 G
06 72 8 8 8 A
Binding TFs: 6jnn_B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 6jnn_E
6jnn_F
Publications: Qiu Q, Mei H, Deng X, He K, Wu B, Yao Q, Zhang J, Lu F, Ma J, Cao X. DNA methylation repels targeting of Arabidopsis REF6. Nat Commun 10:2063 (2019). [Pubmed]

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