DNA Binding Motif

Accessions: 4s2q_D (3D-footprint 20231221)
Names: Transcription factor SOX-9
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element
Length: 7
Consensus: wACAaAg
Weblogo:
PSSM: P0 A C G T
01 44 9 9 34 w
02 91 2 1 2 A
03 11 69 11 5 C
04 73 3 18 2 A
05 60 11 14 11 a
06 73 3 17 3 A
07 12 13 60 11 g
Binding TFs: 4s2q_D (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 4s2q_A
4s2q_B

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