DNA Binding Motif

Accessions: DgsA (RegulonDB 7.5)
Names: DgsA, DgsA DNA-binding transcriptional repressor
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 23
Consensus: TTWTTTTrvwbykCGwAAWWAwT
Weblogo:
PSSM: P0 A C G T
01 1 0 0 6 T
02 0 0 0 7 T
03 5 0 0 2 W
04 0 0 0 7 T
05 0 0 0 7 T
06 0 0 0 7 T
07 0 1 0 6 T
08 4 0 3 0 r
09 2 3 2 0 v
10 3 1 1 2 w
11 0 2 3 2 b
12 1 3 0 3 y
13 0 0 3 4 k
14 0 6 0 1 C
15 0 0 7 0 G
16 4 0 0 3 w
17 7 0 0 0 A
18 7 0 0 0 A
19 2 0 0 5 W
20 2 0 0 5 W
21 6 0 0 1 A
22 4 1 0 2 w
23 1 0 0 6 T
Binding TFs: ECK120007897 (ROK family)
Binding Sites: ECK120011242
ECK120011244
ECK120013416
ECK120014107
ECK120014113
ECK120015755

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