DNA Binding Motif

						

			
Accessions: FNR (DBTBS 1.0)

			
Names: FNR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 16
Consensus: TGTGAhrTAsWTCACW
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0      1      T
02      0      0      1      0      G
03      0      0      0      1      T
04      0      0      1      0      G
05      1      0      0      0      A
06   0.26   0.49      0   0.26      h
07   0.53      0   0.47      0      r
08      0      0      0      1      T
09      1      0      0      0      A
10   0.21   0.40   0.40      0      s
11   0.31      0      0   0.69      W
12      0      0      0      1      T
13      0      1      0      0      C
14      1      0      0      0      A
15      0      1      0      0      C
16   0.69      0      0   0.31      W
Binding TFs: FNR (Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, L-lysine 6-monooxygenase (NADPH-requiring), Pyridine nucleotide-disulphide oxidoreductase)
Binding Sites: arfM_1
narG_1
narK_1
			
Publications: Reents H, Münch R, Dammeyer T, Jahn D, Härtig E. The Fnr regulon of Bacillus subtilis. Journal of bacteriology 188:1103-12 (2006). [Pubmed]


Marino M, Ramos H.C, Hoffmann T, Glaser P, Jahn D. Modulation of anaerobic energy metabolism of Bacillus subtilis by arfM (ywiD). Journal of bacteriology 183:6815-21 (2001). [Pubmed]


Cruz Ramos H, Boursier L, Moszer I, Kunst F, Danchin A, Glaser P. Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms. The EMBO journal 14:5984-94 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.