DNA Binding Motif

Accessions: MA1046.1 (JASPAR 2024)
Names: NTL9
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq, PBM
Length: 9
Consensus: TTAAGTAAT
Weblogo:
PSSM: P0 A C G T
01 10 10 10 971 T
02 5 5 5 985 T
03 985 5 5 5 A
04 985 5 5 5 A
05 5 5 985 5 G
06 5 5 5 985 T
07 985 5 5 5 A
08 985 5 5 5 A
09 10 10 10 971 T
Type: Heterodimer
Binding TFs: F4JN35 (No apical meristem (NAM) protein)
F4JN35
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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