DNA Binding Motif

Accessions: 2xro_E (3D-footprint 20231221)
Names: HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV
Organisms: Pseudomonas putida, strain DOT-T1E
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of TtgV in complex with its DNA operator
Length: 5
Consensus: CGgtA
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 0 96 0 G
03 13 13 54 16 g
04 16 13 13 54 t
05 96 0 0 0 A
Binding TFs: 2xro_E (Bacterial transcriptional regulator, Transcriptional regulator, IclR helix-turn-helix domain, Winged helix-turn-helix DNA-binding)
Binding Sites: 2xro_X
2xro_Y
Publications: Lu D, Fillet S, Meng C, Alguel Y, Kloppsteck P, Bergeron J, Krell T, Gallegos M.T, Ramos J, Zhang X. Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators. Genes & development 24:2556-65 (2010). [Pubmed]

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