DNA Binding Motif
Accessions: | MA1214.1 (JASPAR 2024), M0408 (AthalianaCistrome v4_May2016) |
Names: | ATHB-40, ATHB40, ATHB40.DAP, T18236; |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | DAP-seq |
Length: | 21 |
Consensus: | wmacCAATwATTgaawhwwww |
Weblogo: | |
PSSM: | P0 A C G T 01 233 93 118 156 w 02 213 169 95 123 m 03 404 25 68 103 a 04 111 325 68 96 c 05 21 530 0 49 C 06 600 0 0 0 A 07 600 0 0 0 A 08 0 0 0 600 T 09 388 18 25 169 w 10 600 0 0 0 A 11 0 0 0 600 T 12 56 5 41 498 T 13 92 9 397 102 g 14 255 60 141 144 a 15 221 104 126 149 a 16 171 145 133 151 w 17 192 159 79 170 h 18 206 121 56 217 w 19 216 67 70 247 w 20 261 64 54 221 w 21 221 85 51 243 w |
Type: | Heterodimer |
Binding TFs: | O23208 / T18236 (Homeobox domain) O23208 |
Binding Sites: | MA1214.1.1 MA1214.1.10 MA1214.1.11 MA1214.1.12 MA1214.1.13 MA1214.1.14 MA1214.1.15 MA1214.1.16 MA1214.1.17 MA1214.1.18 MA1214.1.19 MA1214.1.2 MA1214.1.20 MA1214.1.3 MA1214.1.4 MA1214.1.5 MA1214.1.6 MA1214.1.7 MA1214.1.8 MA1214.1.9 |
Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.