DNA Binding Motif

						

			
Accessions: MA1214.1 (JASPAR 2024), M0408 (AthalianaCistrome v4_May2016)

			
Names: ATHB-40, ATHB40, ATHB40.DAP, T18236;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: wmacCAATwATTgaawhwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    233     93    118    156      w
02    213    169     95    123      m
03    404     25     68    103      a
04    111    325     68     96      c
05     21    530      0     49      C
06    600      0      0      0      A
07    600      0      0      0      A
08      0      0      0    600      T
09    388     18     25    169      w
10    600      0      0      0      A
11      0      0      0    600      T
12     56      5     41    498      T
13     92      9    397    102      g
14    255     60    141    144      a
15    221    104    126    149      a
16    171    145    133    151      w
17    192    159     79    170      h
18    206    121     56    217      w
19    216     67     70    247      w
20    261     64     54    221      w
21    221     85     51    243      w
Type: Heterodimer
Binding TFs: O23208 / T18236 (Homeobox domain)
O23208
Binding Sites: MA1214.1.1
MA1214.1.10
MA1214.1.11
MA1214.1.12
MA1214.1.13
MA1214.1.14
MA1214.1.15
MA1214.1.16
MA1214.1.17
MA1214.1.18
MA1214.1.19
MA1214.1.2
MA1214.1.20
MA1214.1.3
MA1214.1.4
MA1214.1.5
MA1214.1.6
MA1214.1.7
MA1214.1.8
MA1214.1.9
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.