DNA Binding Motif

Accessions: 2ff0_A (3D-footprint 20210203)
Names: Steroidogenic factor 1
Organisms: Mus musculus
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Solution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit Promoter
Length: 9
Consensus: TGgCCCtGA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 84 12 G
03 12 12 60 12 g
04 0 96 0 0 C
05 0 96 0 0 C
06 0 96 0 0 C
07 12 12 12 60 t
08 0 0 96 0 G
09 96 0 0 0 A
Binding TFs: 2ff0_A (Zinc finger, C4 type (two domains))
Binding Sites: 2ff0_B
2ff0_C
Publications: Little T.H, Zhang Y, Matulis C.K, Weck J, Zhang Z, Ramachandran A, Mayo K.E, Radhakrishnan I. Sequence-specific deoxyribonucleic acid (DNA) recognition by steroidogenic factor 1: a helix at the carboxy terminus of the DNA binding domain is necessary for complex stability. Molecular endocrinology (Baltimore, Md.) 20:831-43 (2006). [Pubmed]

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