DNA Binding Motif

						

			
Accessions: M0034 (AthalianaCistrome v4_May2016)

			
Names: ABR1.ampDAP, T26203;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: hwyckcCGCCGCmAtwtycry
Weblogo: 
PSSM: P0      A      C      G      T
01    149    205     64    165      h
02    183    102    128    170      w
03     89    235    103    156      y
04    118    302     47    116      c
05    111     69    205    198      k
06     26    374    126     57      c
07    110    468      5      0      C
08      0      0    583      0      G
09      0    583      0      0      C
10      0    583      0      0      C
11      1      0    582      0      G
12     26    449      5    103      C
13    237    319      0     27      m
14    435      0     78     70      A
15    120     82      3    378      t
16    149    120     30    284      w
17    124     82    115    262      t
18     74    224     85    200      y
19    127    224     99    133      c
20    146    123    185    129      r
21    124    207     98    154      y
Binding TFs: T26203 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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