DNA Binding Motif

Accessions: 1ig7_A (3D-footprint 20231221)
Names: Homeotic protein Msx-1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Msx-1 Homeodomain/DNA Complex Structure
Length: 7
Consensus: cTAATnG
Weblogo:
PSSM: P0 A C G T
01 10 64 10 12 c
02 0 0 0 96 T
03 76 10 0 10 A
04 96 0 0 0 A
05 10 10 10 66 T
06 24 24 24 24 n
07 0 0 96 0 G
Binding TFs: 1ig7_A (Homeobox domain)
Binding Sites: 1ig7_B
1ig7_C
Publications: Hovde S, Abate-Shen C, Geiger J.H. Crystal structure of the Msx-1 homeodomain/DNA complex. Biochemistry 40:12013-21 (2001). [Pubmed]

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