DNA Binding Motif
| Accessions: | MarA (RegulonDB 7.5) |
| Names: | MarA, MarA DNA-binding transcriptional dual regulator |
| Organisms: | ECK12 |
| Libraries: | RegulonDB 7.5 1 1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed] |
| Length: | 19 |
| Consensus: | dtTTrryadWwyGTGCyrT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9 0 7 6 d 02 3 2 5 12 t 03 3 1 2 16 T 04 0 0 5 17 T 05 10 3 7 2 r 06 9 2 8 3 r 07 2 14 0 6 y 08 10 5 3 4 a 09 8 1 6 7 d 10 6 1 0 15 W 11 6 3 1 12 w 12 5 7 0 10 y 13 3 1 15 3 G 14 3 1 1 17 T 15 0 1 21 0 G 16 2 16 1 3 C 17 0 11 2 9 y 18 8 0 10 4 r 19 0 2 0 20 T |
| Binding TFs: | ECK120005874 (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain) |
| Binding Sites: | ECK120011414 ECK120011423 ECK120011425 ECK120011585 ECK120011627 ECK120013181 ECK120013183 ECK120013185 ECK120013187 ECK120013189 ECK120016803 ECK120016806 ECK120016808 ECK120017138 ECK120017170 ECK120035046 ECK120051371 ECK125110174 |
| Publications: | McMurry LM., Levy SB. Evidence that regulatory protein MarA of Escherichia coli represses rob by steric hindrance. J Bacteriol. 192(15):3977-82 (2010). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.