DNA Binding Motif

Accessions: 6f41_U (3D-footprint 20210203)
Names: TATA-box-binding protein
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RNA Polymerase III initially transcribing complex
Length: 7
Consensus: AntTnTa
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 24 24 24 24 n
03 13 16 13 54 t
04 0 0 0 96 T
05 24 24 24 24 n
06 0 0 0 96 T
07 54 13 13 16 a
Binding TFs: 6f41_U (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 6f41_X
6f41_Y
Publications: Vorländer MK, Khatter H, Wetzel R, Hagen WJH, Müller CW. Molecular mechanism of promoter opening by RNA polymerase III. Nature 553:295-300 (2018). [Pubmed]

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