DNA Binding Motif
| Accessions: | UP00570A_1 (UniPROBE 20160601) |
| Names: | Abscicic-acid-responsive NAC, ANAC019, Arabidopsis NAC domain containing protein 19, At1g52890, F14G24_16, F14G24.16, NAC domain-containing protein 19 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 12 |
| Consensus: | tACACGbmACyk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0.06 0.21 0.58 t 02 0.73 0.03 0.14 0.10 A 03 0.01 0.88 0.02 0.10 C 04 0.98 0 0.01 0.01 A 05 0.01 0.98 0.01 0 C 06 0 0.01 0.98 0.01 G 07 0.01 0.33 0.28 0.38 b 08 0.63 0.35 0 0.02 m 09 0.96 0.01 0.01 0.01 A 10 0.08 0.79 0.05 0.08 C 11 0.09 0.41 0.06 0.44 y 12 0.19 0.19 0.27 0.35 k |
| Binding TFs: | UP00570A (No apical meristem (NAM) protein) |
| Binding Sites: | ATTCCGTG CACGGCAC GTGCCGTA GTTACGTA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGGAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC CGTGCACG GCACGGCA GCACGTAA GTTCCGTA TCACGGAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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