DNA Binding Motif

Accessions: 1imh_C (3D-footprint 20231221)
Names: NUCLEAR FACTOR OF ACTIVATED T CELLS 5
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TonEBP/DNA COMPLEX
Length: 5
Consensus: tTCCa
Weblogo:
PSSM: P0 A C G T
01 10 10 12 64 t
02 10 10 0 76 T
03 0 96 0 0 C
04 0 96 0 0 C
05 64 12 10 10 a
Binding TFs: 1imh_C (Rel homology domain (RHD), IPT/TIG domain)
Binding Sites: 1imh_A
1imh_B
Publications: Stroud J.C, Lopez-Rodriguez C, Rao A, Chen L. Structure of a TonEBP-DNA complex reveals DNA encircled by a transcription factor. Nature structural biology 9:90-4 (2002). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.