DNA Binding Motif

						

			
Accessions: MA0387.1 (JASPAR 2024)

			
Names: SPT2
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 10
Consensus: wwTTRavkAr
Weblogo: 
PSSM: P0      A      C      G      T
01     97      0      3     57      w
02     66     44     12     58      w
03      0      0      0    161      T
04      4      0      0    152      T
05    130      0     54      0      R
06    120     23     46      0      a
07     83     66     60      2      v
08      0      0    105    102      k
09    161      0      0      0      A
10    122      0     69      0      r
Type: Heterodimer
Binding TFs: P06843 (SPT2 chromatin protein)
P06843
			
Publications: MacIsaac K.D, Wang T, Gordon D.B, Gifford D.K, Stormo G.D, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC bioinformatics 7:113 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.