DNA Binding Motif

Accessions: MF0005.1 (JASPAR 2018)
Names: Forkhead class
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: METAMODEL
Length: 9
Consensus: TGTTTAytt
Weblogo:
PSSM: P0 A C G T
01 3.060 2.420 0 94.520 T
02 24.600 0 74.290 1.110 G
03 0 1.790 0.770 97.440 T
04 0.350 1.030 0 98.630 T
05 1.350 0 8.650 90 T
06 76.100 0 20.650 3.250 A
07 2.220 40.680 6.370 50.730 y
08 16.920 10.320 22.620 50.140 t
09 6.650 20.280 11.580 61.490 t
Publications: Sandelin A, Wasserman W.W. Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics. Journal of molecular biology 338:207-15 (2004). [Pubmed]

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