DNA Binding Motif

						

			
Accessions: MA0923.1 (JASPAR 2024)

			
Names: lim-4
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 9
Consensus: rsYAATTAr
Weblogo: 
PSSM: P0      A      C      G      T
01    274    238    312    176      r
02    112    403    304    181      s
03     22    291      6    681      Y
04    852    117     20     11      A
05    980      7     12      2      A
06      7      4      3    985      T
07     10    103     49    839      T
08    939     10     13     38      A
09    514     52    331    103      r
Type: Heterodimer
Binding TFs: G5EEA1 (Homeobox domain, LIM domain)
G5EEA1
			
Publications: Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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