DNA Binding Motif
| Accessions: | MA1278.1 (JASPAR 2024), M0250 (AthalianaCistrome v4_May2016) |
| Names: | DOF3.4, OBP1, OBP1.DAP, T12343; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 21 |
| Consensus: | ttyyytytttttywrCTTTTt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 145 136 80 239 t 02 130 137 104 229 t 03 92 169 82 257 y 04 111 194 57 238 y 05 80 153 42 325 y 06 81 107 62 350 t 07 87 164 34 315 y 08 102 135 74 289 t 09 106 119 62 313 t 10 91 142 51 316 t 11 113 67 70 350 t 12 67 83 69 381 t 13 47 169 17 367 y 14 161 93 43 303 w 15 204 146 157 93 r 16 0 600 0 0 C 17 0 14 0 586 T 18 0 7 0 593 T 19 0 0 0 600 T 20 145 29 0 426 T 21 59 105 104 332 t |
| Type: | Heterodimer |
| Binding TFs: | Q39088 / T12343 (Dof domain, zinc finger) Q39088 |
| Binding Sites: | MA1278.1.10 MA1278.1.1 MA1278.1.11 MA1278.1.12 MA1278.1.13 MA1278.1.14 MA1278.1.15 MA1278.1.16 MA1278.1.17 MA1278.1.18 MA1278.1.19 MA1278.1.2 MA1278.1.20 MA1278.1.3 MA1278.1.4 MA1278.1.5 MA1278.1.6 MA1278.1.7 MA1278.1.8 MA1278.1.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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