DNA Binding Motif

						

			
Accessions: 1b3t_AB (3D-footprint 20231221)

			
Names: PROTEIN (NUCLEAR PROTEIN EBNA1)
Organisms: Epstein-Barr virus (strain B95-8) (HHV-4), Human herpesvirus 4
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
Length: 18
Consensus: GGGAAGCaTAnGCTTCCC
Weblogo: 
PSSM: P0      A      C      G      T
01      1      1     92      2      G
02      0      0     96      0      G
03      0      0     96      0      G
04     96      0      0      0      A
05     90      1      4      1      A
06      1      0     95      0      G
07      1     89      1      5      C
08     63     13     11      9      a
09      1     13      0     82      T
10     76      4     11      5      A
11     24     24     24     24      n
12      8      1     86      1      G
13      1     71     13     11      C
14      1      1      4     90      T
15      0      0      0     96      T
16      0     96      0      0      C
17      0     96      0      0      C
18      1     90      4      1      C
Binding TFs: 1b3t_A / 1b3t_B (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
Binding Sites: 1b3t_C / 1b3t_D
			
Publications: Bochkarev A, Bochkareva E, Frappier L, Edwards A.M. The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1. Journal of molecular biology 284:1273-8 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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