DNA Binding Motif

						

			
Accessions: Rarg_DBD_3 (HumanTF 1.0), MA0860.1 (JASPAR 2024)

			
Names: Rarg, Rarg(var.2)
Organisms: Mus musculus
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4, HT-SELEX
Length: 17
Consensus: AAGGTCAmsArAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   4074     10    806     31      A
02   4543      7    267      0      A
03      0      4   5888      2      G
04      0      0   5573    200      G
05      0     11     12   4309      T
06      2   6256      0      0      C
07   4044      3     12      0      A
08   1394   2677    386    780      m
09    314   1778   2442    595      s
10   3248    482    558    479      A
11   2745     58   2133     57      r
12   3603     32    838      2      A
13      0      0   5891      1      G
14      0      8   5040    319      G
15     14      2      0   4540      T
16      7   5340      2     22      C
17   4764      5      6      0      A
Type: Heterodimer
Binding TFs: Rarg_DBD (Zinc finger, C4 type (two domains))
P18911 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P18911
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Bastien J, Rochette-Egly C. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene : (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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