DNA Binding Motif
Accessions: | EcR/usp (DrosophilaTF 1.1) |
Names: | EcR/usp |
Organisms: | Drosophila melanogaster |
Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
Length: | 15 |
Consensus: | rrGGTCAaTGACCyC |
Weblogo: | |
PSSM: | P0 A C G T 01 0.25 0.17 0.58 0 r 02 0.67 0.04 0.29 0 r 03 0 0 1 0 G 04 0 0 0.83 0.17 G 05 0 0 0 1 T 06 0 0.79 0 0.21 C 07 1 0 0 0 A 08 0.63 0.08 0.08 0.21 a 09 0 0.08 0.04 0.88 T 10 0.04 0 0.96 0 G 11 0.7 0.13 0.13 0.04 A 12 0.21 0.79 0 0 C 13 0.21 0.75 0 0.04 C 14 0.04 0.38 0.04 0.54 y 15 0.04 0.75 0.04 0.17 C |
Binding TFs: | EcR/usp (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) |
Publications: | Vögtli M, Elke C, Imhof M.O, Lezzi M. High level transactivation by the ecdysone receptor complex at the core recognition motif. Nucleic acids research 26:2407-14 (1998). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.