DNA Binding Motif

Accessions: EcR/usp (DrosophilaTF 1.1)
Names: EcR/usp
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 15
Consensus: rrGGTCAaTGACCyC
Weblogo:
PSSM: P0 A C G T
01 0.25 0.17 0.58 0 r
02 0.67 0.04 0.29 0 r
03 0 0 1 0 G
04 0 0 0.83 0.17 G
05 0 0 0 1 T
06 0 0.79 0 0.21 C
07 1 0 0 0 A
08 0.63 0.08 0.08 0.21 a
09 0 0.08 0.04 0.88 T
10 0.04 0 0.96 0 G
11 0.7 0.13 0.13 0.04 A
12 0.21 0.79 0 0 C
13 0.21 0.75 0 0.04 C
14 0.04 0.38 0.04 0.54 y
15 0.04 0.75 0.04 0.17 C
Binding TFs: EcR/usp (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Publications: Vögtli M, Elke C, Imhof M.O, Lezzi M. High level transactivation by the ecdysone receptor complex at the core recognition motif. Nucleic acids research 26:2407-14 (1998). [Pubmed]

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