DNA Binding Motif
| Accessions: | 5tw1_F (3D-footprint 20231221) |
| Names: | RNA polymerase sigma factor SigA |
| Organisms: | Mycobacterium smegmatis, Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of a Mycobacterium smegmatis transcription initiation complex with RbpA |
| Length: | 25 |
| Consensus: | CTTGACAnnnnnnnnnnnnTnTGCT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7 75 7 7 C 02 0 0 0 96 T 03 7 9 7 73 T 04 0 0 96 0 G 05 96 0 0 0 A 06 0 96 0 0 C 07 73 9 7 7 A 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 24 24 24 24 n 13 24 24 24 24 n 14 24 24 24 24 n 15 24 24 24 24 n 16 24 24 24 24 n 17 24 24 24 24 n 18 24 24 24 24 n 19 24 24 24 24 n 20 7 7 9 73 T 21 24 24 24 24 n 22 0 0 0 96 T 23 0 0 96 0 G 24 0 96 0 0 C 25 0 0 0 96 T |
| Binding TFs: | 5tw1_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4) |
| Binding Sites: | 5tw1_O 5tw1_P |
| Publications: | Hubin EA, Fay A, Xu C, Bean JM, Saecker RM, Glickman MS, Darst SA, Campbell EA. Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA. Elife : (2017). [Pubmed] |
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