DNA Binding Motif

Accessions: AGL3 (Athamap 20091028), MA0001.2 (JASPAR 2018)
Names: AGL3
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2018 2
1 Bülow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 [Pubmed]
Notes: SELEX
Length: 18
Consensus: skwwCCAwwwWwrGwwab
Weblogo:
PSSM: P0 A C G T
01 22 29 34 10 s
02 16 9 29 41 k
03 25 8 4 58 w
04 27 16 13 39 w
05 0 92 0 3 C
06 0 79 0 16 C
07 82 1 2 10 A
08 40 4 3 48 w
09 56 0 1 38 w
10 35 0 0 60 w
11 65 1 4 25 W
12 25 4 3 63 w
13 64 0 28 3 r
14 0 0 92 3 G
15 33 14 15 33 w
16 52 5 7 31 w
17 45 23 13 14 a
18 21 24 26 24 b
Binding TFs: P29383 / AGL3 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28:549-567 (1995). [Pubmed]

Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed]

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