DNA Binding Motif

						

			
Accessions: MA1367.1 (JASPAR 2024), M0786 (AthalianaCistrome v4_May2016)

			
Names: AT1G76870, AT1G76870.DAP, T04801;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: awmywAAACCrsww
Weblogo: 
PSSM: P0      A      C      G      T
01    209     94     53    100      a
02    218     64     59    115      w
03    173    127     65     91      m
04     87    173     73    123      y
05    287     21      3    145      w
06    436      5      5     10      A
07    418      0      2     36      A
08    448      6      0      2      A
09      6    450      0      0      C
10      0    452      0      4      C
11    175      4    257     20      r
12     41    150    222     43      s
13    177     71     53    155      w
14    229     46     35    146      w
Binding TFs: T04801 (Myb/SANT-like DNA-binding domain)
			
Publications: Kaplan-Levy RN, Brewer PB, Quon T, Smyth DR. The trihelix family of transcription factors--light, stress and development. Trends Plant Sci 17:163-71 (2012). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.