DNA Binding Motif

						

			
Accessions: MA1239.1 (JASPAR 2024), M0099 (AthalianaCistrome v4_May2016)

			
Names: ERF104, ERF104.DAP, T22187;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: crccryckcCGCCGCCryy
Weblogo: 
PSSM: P0      A      C      G      T
01     78    299     75    105      c
02    151     96    194    116      r
03     81    317     58    101      c
04     97    309     56     95      c
05    165     61    207    124      r
06     67    293     56    141      y
07     86    363     33     75      c
08    125     50    213    169      k
09     22    369     76     90      c
10     82    464      6      5      C
11     36      0    496     25      G
12      0    555      2      0      C
13      0    557      0      0      C
14     27      0    527      3      G
15      2    466      0     89      C
16      4    553      0      0      C
17    214      0    281     62      r
18     40    274     51    192      y
19    130    218     60    149      y
Type: Heterodimer
Binding TFs: Q9FKG1 / T22187 (AP2 domain)
Q9FKG1
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.