DNA Binding Motif

Accessions: 3a01_F (3D-footprint 20231221)
Names: Homeobox protein aristaless
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Aristaless and Clawless homeodomains bound to DNA
Length: 8
Consensus: TTAAnnAA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 9 9 11 67 T
03 96 0 0 0 A
04 96 0 0 0 A
05 24 24 24 24 n
06 24 24 24 24 n
07 69 9 9 9 A
08 69 9 9 9 A
Binding TFs: 3a01_F (Homeobox domain)
Binding Sites: 3a01_G
3a01_H
Publications: Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M. Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. The EMBO journal 29:1613-23 (2010). [Pubmed]

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