DNA Binding Motif

Accessions: MA0442.2 (JASPAR 2018)
Names: SOX10
Organisms: Homo sapiens
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rraACAAAGvm
Weblogo:
PSSM: P0 A C G T
01 683 397 527 448 r
02 723 283 571 478 r
03 1118 372 317 248 a
04 2023 4 3 25 A
05 3 1989 11 52 C
06 2029 7 7 12 A
07 1968 28 20 39 A
08 1959 23 12 61 A
09 10 13 2012 20 G
10 666 552 619 218 v
11 638 555 505 357 m
Binding TFs: P56693 (Sox developmental protein N terminal , HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: MA0442.2.1
MA0442.2.10
MA0442.2.11
MA0442.2.12
MA0442.2.13
MA0442.2.14
MA0442.2.15
MA0442.2.16
MA0442.2.17
MA0442.2.18
MA0442.2.19
MA0442.2.2
MA0442.2.20
MA0442.2.3
MA0442.2.4
MA0442.2.5
MA0442.2.6
MA0442.2.7
MA0442.2.8
MA0442.2.9
Publications: Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

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