DNA Binding Motif

						

			
Accessions: MA0442.2 (JASPAR 2024)

			
Names: SOX10
Organisms: Homo sapiens, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rraACAAAGvm
Weblogo: 
PSSM: P0      A      C      G      T
01    683    397    527    448      r
02    723    283    571    478      r
03   1118    372    317    248      a
04   2023      4      3     25      A
05      3   1989     11     52      C
06   2029      7      7     12      A
07   1968     28     20     39      A
08   1959     23     12     61      A
09     10     13   2012     20      G
10    666    552    619    218      v
11    638    555    505    357      m
Type: Heterodimer
Binding TFs: P56693 (HMG (high mobility group) box, Domain of unknown function (DUF1898), Sox developmental protein N terminal )
P56693
Binding Sites: MA0442.2.1
MA0442.2.10
MA0442.2.11
MA0442.2.12
MA0442.2.13
MA0442.2.14
MA0442.2.15
MA0442.2.16
MA0442.2.17
MA0442.2.18
MA0442.2.19
MA0442.2.2
MA0442.2.20
MA0442.2.3
MA0442.2.4
MA0442.2.5
MA0442.2.6
MA0442.2.7
MA0442.2.8
MA0442.2.9
			
Publications: Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.